Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
Directional/stranded RNA-seq data -which parameters to choose?
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
Manual | HISAT2
Manual
Chipster
Bioinformatics Analysis of Omics Data with the Shell & R | R-bloggers
Problem with HISAT2 detection of reads mapping to repeats - rna-star - Galaxy Community Help
RNAseq analyses workflow to find differentially expressed genes
Biotechvana
03 From fastq files to alignments – Introduction to RNA-seq
![wiki:hisat2build [Computational biology at CSU]](https://rna.colostate.edu/2020/lib/exe/fetch.php?w=600&tok=3f7798&media=wiki:screen_shot_2018-11-15_at_3.49.44_am.png "wiki:hisat2build [Computational biology at CSU]")
wiki:hisat2build [Computational biology at CSU]
Getting started with HISAT, StringTie, and Ballgown - Dave Tang's blog
e-Learning: Practical Transcriptomics Food-ENG-F1000
StringTie
Manual | HISAT2
Mapping with HISAT2 - Bioinformatics Team (BioITeam) at the University of Texas - UT Austin Wikis
Expression | Griffith Lab
No-mixed behaviour HISAT2 - hisat2 - Galaxy Community Help
User manual | DEWE
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown | Nature Protocols
User manual | DEWE
hisat2 - Bountysource
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
Alignment | Griffith Lab
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
